In selecting the right accounting software program for e-commerce companies, I like to recommend one that may sync transactions between the e-commerce platform and accounting software program, observe multi-channel gross sales, reconcile funds, deal with gross sales tax, and automate COGS and returns for correct reporting. With that in thoughts, listed below are the software program that made it to my listing:

Fast comparability of the perfect accounting software program for e-commerce

QuickBooks On-line: Greatest general

My ranking: 4.4 out of 5

QuickBooks On-line leads my roundup of the perfect e-commerce accounting software program, primarily as a result of it presents direct integrations with Shopify and BigCommerce. Whereas platforms like Amazon, eBay, and Squarespace lack native QuickBooks connections, they sync seamlessly via third-party connectors like A2X, Zapier, and Webgility — all of which combine nicely with QuickBooks On-line.

Past its highly effective options, QuickBooks is broadly used throughout the US. This makes it a perfect selection should you’re trying to outsource bookkeeping to unbiased CPAs or corporations specializing in e-commerce accounting.

Pricing

• Easy Begin: $35 per thirty days for one seat
• Necessities: $65 per thirty days for 2 customers
• Plus: $99 per thirty days for 5 seats
• Superior: $235 per thirty days for 25 customers

You’ll be able to strive QuickBooks On-line free for 30 days or get a 50% low cost for 3 months should you join instantly.

My analysis

QuickBooks On-line earns excessive marks for each accounting and e-commerce performance. Its energy in accounting is predicted, given its versatility, however what stands out is its e-commerce adaptability. Whereas not an e-commerce platform itself, QuickBooks On-line integrates instantly and through third-party apps with main e-commerce platforms. The built-in Mailchimp integration inside Intuit additionally makes deserted cart e mail automation seamless.

Furthermore, it did nicely in ecommerce options because of its sturdy integrations and automation however misplaced factors for missing built-in deserted cart monitoring and superior market reporting. Whereas it syncs with Shopify, Amazon, and eBay, multi-channel sellers might have third-party apps like A2X for detailed income attribution and reconciliation. Regardless of this, it stays a best choice for small or midsize companies.

The primary downside of QuickBooks On-line is scalability, because it limits the variety of seats to a most of 25. In the event you want extra customers, Xero is likely to be the higher possibility. However should you want extra seats and have outgrown QuickBooks, I extremely advocate Sage Intacct.

Learn our QuickBooks On-line assessment

Execs and cons

Xero: Greatest for rising corporations with multicurrency wants

My ranking: 4.2 out of 5

Xero is my decide for rising corporations as a result of it offers limitless seats in all plans. On prime of that, it presents excellent options in multicurrency transactions, making it an ideal decide for e-commerce companies with worldwide transactions.

It additionally integrates with Shopify, Amazon, WooCommerce, BigCommerce, and extra through third-party apps like A2X, Webgility, and Synder. These integrations automate gross sales knowledge syncing, tax calculations, and COGS monitoring. Its financial institution feeds and automated reconciliation streamline fee processing from Stripe, PayPal, and different gateways, decreasing handbook work.

Pricing

• Early: $20 per thirty days (restricted to twenty invoices and 5 payments)
• Rising: $47 per thirty days
• Established: $80 per thirty days

Get 90% off for 3 months while you join, or strive a plan for 30 days and pay the common price after the trial.

My analysis

Xero goes head-to-head with QuickBooks On-line however stands out for scalability and international e-commerce assist. Not like QuickBooks, it permits limitless customers, making it perfect for rising companies needing entry for accountants, finance groups, and e-commerce managers.

One other key benefit is its multicurrency assist. It mechanically converts transactions in over 160 currencies with real-time trade charges, which is important for worldwide gross sales on platforms like Amazon, Shopify, and eBay.

Nonetheless, Xero didn’t rating as excessive in e-commerce options as a result of its integration choices and reporting capabilities aren’t as polished. The platform’s editor lacks flexibility, making it irritating to customise stories or streamline workflows for e-commerce companies. Moreover, Xero is much less widespread within the US, the place QuickBooks On-line dominates the market. Many US CPAs and bookkeepers are QuickBooks ProAdvisors, making QuickBooks On-line perfect for companies eager to outsource their bookkeeping.

Learn our assessment of Xero

Execs and cons

Zoho Books: Greatest for automation and customization

My ranking: 4.1 out of 5

Zoho Books is tightly built-in throughout the Zoho ecosystem, making it an ideal selection for e-commerce companies utilizing Zoho Commerce, Zoho CRM, or Zoho Stock. Its built-in automation reduces handbook work and seamless knowledge syncing retains financials up to date throughout platforms.

With a number of integrations throughout the Zoho setting, it provides companies centralized management over gross sales, accounting, and stock. Options like automated invoicing, tax monitoring, and order administration simplify e-commerce operations. Although it lacks direct Amazon or eBay integrations, instruments like Zapier and Zoho Circulate assist bridge the hole, making it a versatile and automation-friendly possibility for e-commerce sellers.

Pricing

• Free: For one person solely
• Commonplace: $15 per thirty days for 3 seats
• Skilled: $40 per thirty days for 5 customers
• Premium: $60 per thirty days for 10 seats
• Elite: $120 per thirty days for 10 customers
• Final: $240 per thirty days for 15 seats

Extra seats price $11 per person, per thirty days.

My analysis

Zoho Books earns a excessive mark in accounting options — no surprises there. Nonetheless, its e-commerce options took successful as a result of lack of direct integrations with main e-commerce platforms. Whereas Zoho Books integrates with Zoho Commerce, that isn’t a main platform in my analysis, although I nonetheless awarded further factors for it.

What really units Zoho Books aside, although, is its excellent buyer assist, which outperformed many rivals. You’ll be able to contact the group through telephone, e mail, and reside chat, whereas an in depth data base is accessible for fast solutions.

Although Zoho Books presents integrations with different Zoho apps, there’s lots of competitors available in the market which will steer you away from Zoho’s different choices. You probably have no plans to remain throughout the Zoho app ecosystem, I like to recommend going with Xero as a result of it offers extra flexibility with third-party integrations, stronger multi-currency assist, and limitless person entry.

Learn our Zoho Books assessment

Execs and cons

Sage Intacct: Greatest for multi-entity corporations

My ranking: 3.9 out of 5

Sage Intacct is a strong decide if your organization manages a number of organizations. Due to its built-in consolidation options, Sage Intacct makes accounting for intercompany transactions straightforward. It automates eliminations, multi-entity reporting, and forex conversions, decreasing the handbook work sometimes required for consolidated financials.

Past its energy in multi-entity administration, Sage Intacct additionally excels in superior monetary reporting, providing customizable dashboards and deep analytics for e-commerce companies dealing with excessive transaction volumes. Its automation capabilities lengthen to stock monitoring, order administration, and income recognition, making it well-suited for large-scale e-commerce operations.

Pricing

Contact Sage for a customized quote.

My analysis

General, Sage Intacct carried out nicely. It’s the one supplier that aced my evaluation of accounting options, excelling in income administration and multi-entity accounting. That makes it a powerful selection for e-commerce companies needing superior monetary instruments.

It scored decrease in e-commerce options because of its lack of direct integrations with Shopify, Amazon, and eBay, counting on third-party connectors that add complexity and value. It additionally lacks native deserted cart monitoring and multi-channel income attribution, requiring further software program to fill these gaps. Whereas its automation and reporting are sturdy, the absence of built-in e-commerce instruments makes it much less perfect for sellers needing seamless platform connectivity.

Furthermore, it solely scored solely above common in ease of use, primarily because of restricted bookkeeping assist within the US. Whereas Sage Advisors can be found, the community isn’t as widespread as QuickBooks ProAdvisors, which nonetheless dominates the market.

Learn our assessment of Sage

Execs and cons

Wave: Greatest for brand spanking new e-commerce sellers

My ranking: 3.3 out of 5

In the event you’re simply beginning your e-commerce retailer and have fewer gross sales, Wave is the right easy accounting answer for monitoring e-commerce earnings and bills. Because it’s free, it’s perfect for companies wanting to maintain prices low whereas managing primary bookkeeping. In the event you’re an e-commerce vendor who sells part-time and has no plan of scaling up, selecting Wave is a cheap possibility.

Pricing

• Starter: Free for one person
• Professional: $16 for limitless customers

My analysis

Wave has a “glass ceiling” when it comes to capabilities and long-term use. It presents easy accounting options that work for small e-commerce shops or informal sellers. Nonetheless, it lacks built-in COGS monitoring, which may be difficult for companies dealing with excessive gross sales volumes. For smaller shops, monitoring COGS manually in a spreadsheet should still be manageable.

The platform additionally has restricted e-commerce integrations, so don’t anticipate automated stock syncing, multi-channel income monitoring, or superior gross sales tax automation. If you wish to keep free however have the choice to improve and scale, I like to recommend selecting Zoho Books. Its free tier is nice for informal e-commerce.

Learn our Wave assessment

Execs and cons

How I evaluated the perfect e-commerce accounting software program

I used a rubric to guage the 5 finest accounting software program for e-commerce companies.

Pricing (10% of general rating)

This breaks down the true price and worth of accounting software program, making certain you get worth for cash. The bottom subscription and extra person prices are measured towards affordability, with increased scores awarded to a program that retains pricing cheap. Moreover, the features-to-cost ratio reveals whether or not a software’s price ticket is justified by its capabilities, rewarding those who ship sturdy performance with out inflating prices.

Accounting options (40% of general rating)

My evaluation focuses on core accounting capabilities, together with transaction administration, monetary reporting, and automation. I assessment how nicely the software program helps e-commerce companies, significantly in areas like tax compliance, stock monitoring, and multi-entity accounting. Usability, customization, and scalability are additionally key elements, making certain the software meets the wants of rising companies.

E-commerce options (20% of general rating)

This focuses on platform integrations, fee reconciliation, and transaction automation to make sure seamless monetary monitoring. I look at how nicely the software program handles deserted cart monitoring, income attribution, and returns administration, serving to you optimize gross sales and profitability. Moreover, I contemplate multi-channel gross sales assist and reporting accuracy, making certain you’ll be able to observe efficiency throughout completely different platforms and advertising sources.

Ease of use and assist (20% of general rating)

I consider usability, assist, and accessibility, making certain you’ll be able to effectively handle accounting processes. I additionally assessment bookkeeping assist, dashboard navigation, and studying curve, specializing in how intuitive the software program is and the way simply you’ll be able to arrange and combine e-commerce platforms. Moreover, I look at buyer assist high quality, together with response occasions, obtainable sources, and the accessibility of licensed bookkeeping professionals.

Person opinions (10% of general rating)

I additionally take person suggestions from G2 and Capterra into consideration. I exploit the weighted common scores of these two assessment websites as a foundation for the person assessment rating.

Scores

I gave the next base scores to attain software program.

• Glorious (5): The characteristic is totally developed, extremely automated, and seamless. It requires little or no handbook effort, integrates easily with different methods, and consists of superior capabilities that enhance effectivity or present further worth past primary expectations.
• Very Good (4): The characteristic is well-designed and efficient however has minor limitations which will require occasional knowledgeable changes. It really works reliably and consists of most anticipated performance however might lack some refinements or superior settings.
• Good (3): The characteristic meets primary necessities however has noticeable gaps that would influence usability. It features as anticipated however requires some handbook work or knowledgeable enter to function effectively. It’s usable however not the perfect in its class.
• Honest (2): The characteristic exists however is underdeveloped or lacks key features. It could be troublesome to make use of, require frequent workarounds, or rely closely on knowledgeable tweaks to carry out important duties. It’s purposeful however irritating or incomplete.
• Poor (1): The characteristic is barely usable, unreliable, or doesn’t carry out as supposed. It could have important limitations, have frequent errors, or lack key integrations, making it impractical for real-world use.
• N/A (0): The characteristic is totally lacking from the software program, which means customers should depend on third-party options, workarounds, or handbook processes to compensate for its absence.

Along with the bottom ranking, I utilized knowledgeable changes, including 0.1 to 0.5 factors primarily based on key strengths or enhancements that enhance performance. These changes fine-tune the scores to mirror usability, effectivity, and concord if mixed with different options.

Often requested questions (FAQs)

Is QuickBooks good for an e-commerce enterprise?

Sure, it’s. It integrates with Shopify, Amazon, eBay, and different platforms, automates gross sales tax monitoring, and simplifies COGS monitoring, multi-channel income reporting, and fee reconciliation. Its third-party app market additionally expands performance for stock administration and superior analytics.

Which accounting software program is finest for Shopify?

QuickBooks On-line, Xero, and Zoho Books are prime selections for Shopify, relying on enterprise measurement and desires. QuickBooks On-line presents direct integration, automated gross sales monitoring, and robust monetary reporting. In the meantime, Xero is perfect for multicurrency assist and automation, whereas Zoho Books is right for companies already utilizing Zoho’s ecosystem and needing affordability with automation.

What’s the finest accounting software program for Amazon sellers?

QuickBooks On-line, Xero, and Sage Intacct stand out. QuickBooks On-line integrates with Amazon Vendor Central through apps like A2X, making gross sales reconciliation and COGS monitoring seamless, whereas Xero is a powerful different with multicurrency assist and automatic financial institution feeds. Sage Intacct is right for high-volume Amazon sellers needing superior stock administration and multi-entity accounting.